pipeline:window:start

This version (2019/04/02 11:40) is a draft.
Approvals: 0/1

Commands

crYOLO - predict
Prediction with crYOLO, a deep learning high accuracy particle picking procedure
Particle Extraction
Extract particle images from micrographs using particle coordinates files.
Particle Stack
Combine BDB image stacks of individual micrographs to a single virtual stack of all particles.


Alternatives

Particle Coordinates
Generate particle coordinates files using e2boxer_old particle picker.
Particle Coordinates (NEW)
Generate particle coordinates files using new version of e2boxer particle picker.
Restacking
Generates the information necessary to create a new stack from an exiting one.
Particle reextraction
Rewindows particles based on rebox files.
crYOLO - training
Training of crYOLO, a deep learning high accuracy particle picking procedure


Utilities

Display Data
Displays images, volumes, or 1D plots.
Organize Micrographs/Movies
Move selected micrographs/movies from source to destination directory.
crYOLO - boxmanager
Displays boxfiles on images. Allows creation of new training data for crYOLO
Batch Pipeline Execution
Run jobs that wait with the execution on each other
  • pipeline/window/start.txt
  • Last modified: 2019/04/02 11:40
  • by lusnig