WINDOW
Commands
- crYOLO - predict
- Prediction with crYOLO, a deep learning high accuracy particle picking procedure
- Particle Extraction
- Extract particle images from micrographs using particle coordinates files.
- Particle Stack
- Combine BDB image stacks of individual micrographs to a single virtual stack of all particles.
Alternatives
- Particle Coordinates
- Generate particle coordinates files using e2boxer_old particle picker.
- Particle Coordinates (NEW)
- Generate particle coordinates files using new version of e2boxer particle picker.
- Restacking
- Generates the information necessary to create a new stack from an exiting one.
- Particle reextraction
- Rewindows particles based on rebox files.
- crYOLO - training
- Training of crYOLO, a deep learning high accuracy particle picking procedure
Utilities
- Display Data
- Displays images, volumes, or 1D plots.
- Organize Micrographs/Movies
- Move selected micrographs/movies from source to destination directory.
- crYOLO - boxmanager
- Displays boxfiles on images. Allows creation of new training data for crYOLO
- Batch Pipeline Execution
- Run jobs that wait with the execution on each other
