pipeline:utilities:e2display

This version (2019/04/02 09:15) is a draft.
Approvals: 0/1

Display Data: Displays images, volumes, or 1D plots.


Usage in command line

e2display.py  input_data_list  --classmx=CLASSMX  --classes=CLASSES  --pdb=PDB  --singleimage  --plot  --plot3  --fullrange  --newwidget  --ppid=PPID  --verbose=n


e2display exists in non-MPI version.

The program can be executed in several different modes:


1. Browser window with more flexible functionality:

e2display.py


2. Display only one image:

e2display.py input_image


3. Display several images:

e2display.py input_image1 input_image2 ...


Main Parameters

input_data_list
Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)


Advanced Parameters

--classmx
Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none)
--classes
Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none)
--pdb
Show PDB structure: Show PDB structure. (default none)
--singleimage
Single image view: Display a stack in a single image view. (default False)
--plot
Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False)
--plot3
Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False)
--fullrange
Use full range of pixel values: Instead of default auto-contrast, use full range of pixel values for the display of particles stacks and 2D images. (default False)
--newwidget
Use new 3D widget: Highly recommended. (default False)
--ppid
Set PPID: Set PPID of the process. (default -2)
--verbose
Verbose: Accepted values 0-9. (default 0)







EMAN2 Group


Category 1:: APPLICATIONS


programs/e2display.py



Stable:: Works for most people, has been tested; test cases/examples available.


There are no known bugs so far.


  • pipeline/utilities/e2display.txt
  • Last modified: 2019/04/02 09:15
  • by lusnig