Utilities
- Display Data
- Displays images, volumes, or 1D plots.
- PDB File Conversion
- Converts an PDB atomic model into a simulated density map.
- RELION to SPHIRE Conversion
- Convert parameters from RELION to SPHIRE formats.
- Adaptive 3D Mask
- Generates a soft-edged mask for a given volume.
- Binary 3D Mask
- Create a binary 3D mask, e.g. for focused classification.
- Change Size of Image or Volume
- Resample image or volume to desired pixel size.
- Window Image or Volume
- Window (pad or clip) image or volume to desired dimensions.
- Moon Eliminator
- Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
- Angular Distribution
- Creates a .bild file to display the particle orientation distribution in Chimera.
- PostRefiner (Single Volumes)
- Enhancing the power spectrum of any single volumes (Single Volumes Mode).
- Micrograph Movie Alignment
- Align your micrographs using Unblur http://grigoriefflab.janelia.org/unblur.
- Micrograph Movie Summation
- Create an average micrograph using Summovie http://grigoriefflab.janelia.org/unblur.
- Header Operations
- Perform operations on headers of hdf or bdb image file.
- Create Virtual Stack
- Make a virtual BDB image stack.
- Organize Micrographs/Movies
- Move selected micrographs/movies from source to destination directory.
