pipeline:project:start

This version (2018/06/20 13:12) is a draft.
Approvals: 0/1

The project settings allow you to set constant parameter values for a project. These values will be added to the given fields for every step in the workflow as default values. However, you might change them for every individual step if you so wish.

Protein name
Give your protein a catchy name
Micrograph pixel size
Give the pixel size in Angstrom
CTF window size
Size of the sub-images cut out of a given micrograph for CTF estimation. This should be larger for data imaged at large defoci due to possible aliasing effects.
Particle box size
Box size in pixels which should be used for extracting the particles from the micrographs.
Protein particle radius
The estimated radius of your particle. Note that this is RADIUS not diameter!
Point-group symmetry
Point-group symmetry of your protein (e.g. c1, c2, d5, etc.)
Protein molecular mass
Estimated molecular mass of your protein (in kDa)
Imaging configurations
Name for the imaging settings you used (useful, if you have a set of fixed imaging conditions which you gave a one-word name).


  • pipeline/project/start.txt
  • Last modified: 2018/06/20 13:12
  • (external edit)