SORT3D
Commands
- Import Projection Parameters
- Import projection parameters from a file to image header.
- 3D Variability Preprocess
- Prepare your symmetric particles for variability calculations.
- 3D Variability Estimation
- Calculate the 3D variability within your reconstruction.
- 3D Clustering from Iteration - SORT3D_DEPTH
- Find 3D clusters within your data set by checking reproducible members using a MERIDIEN iteration.
- SORT3D_DEPTH Stack Subset
- Create virtual subset stack consisting from particles belong to a SORT3D_DEPTH cluster.
- Local Refinement from Stack
- Perform local refinement from the stack with user-provided orientation parameters.
- PostRefiner
- Combine unfiltered halfset volumes, then enhance the power spectrum.
Alternatives
- 3D Clustering from Stack - SORT3D_DEPTH
- Find 3D clusters within your data set by checking reproducible members using a stack with user-provided orientation parameters.
- PostRefiner (single map)
- Post-refine a single map by enhancing the high frequencies (Single Map Mode)
- Final 3D Reconstruction Only
- Do only final 3D reconstruction using a fully finished 3D refinement iteration.
Utilities
- Display Data
- Displays images, volumes, or 1D plots.
- Volume Adjustment
- Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
- Masking
- Mask creation tool for 2D or 3D masks
- Angular Distribution
- Creates a .bild file to display the particle orientation distribution in Chimera.
- Batch Pipeline Execution
- Run jobs that wait with the execution on each other
