SORT3D

Commands

Import 3D Alignment Parameters
Import 3D alignment parameters from a file to image header.
3D Variability Preprocess
Prepare your symmetric particles for variability calculations.
3D Variability Estimation
Calculate the 3D variability within your reconstruction.
3D Clustering from Iteration - SORT3D_DEPTH
Find 3D clusters within your data set by checking reproducible members using a MERIDIEN iteration.
Local Refinement from Stack
Perform local refinement from the stack with user-provided orientation parameters.


Alternatives

3D Clustering from Stack - SORT3D_DEPTH
Find 3D clusters within your data set by checking reproducible members using a stack with user-provided orientation parameters.
Final 3D Reconstruction Only
Do only final 3D reconstruction using a fully finished 3D refinement iteration.


Utilities

Display Data
Displays images, volumes, or 1D plots.
Adaptive 3D Mask
Generates a soft mask for a given volume.
Binary 3D Mask
Generates a hard mask for a given volume.
Angular Distribution
Creates a .bild file to display the particle orientation distribution in Chimera.