pipeline:utilities:start []

This version is outdated by a newer approved version.

This version (2018/08/22 12:22) is a draft.
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Utilities

Display Data: Displays images, volumes, or 1D plots.
PDB File Conversion: Converts an PDB atomic model into a simulated density map.
RELION to SPHIRE Conversion: Convert parameters from RELION to SPHIRE formats.
Adaptive 3D Mask: Generates a soft-edged mask for a given volume.
Binary 3D Mask: Create a binary 3D mask, e.g. for focused classification.
Change Size of Image or Volume: Resample image or volume to desired pixel size.
Window Image or Volume: Window (pad or clip) image or volume to desired dimensions.
Moon Eliminator: Removes disconnected regions from a 3D Map and optionally creates a mask.
Angular Distribution: Creates a .bild file to display the particle orientation distribution in Chimera.
PostRefiner (Single Volumes): Enhancing the power spectrum of any single volumes (Single Volumes Mode).
Micrograph Movie Alignment: Align your micrographs using Unblur http://grigoriefflab.janelia.org/unblur.
Micrograph Movie Summation: Create an average micrograph using Summovie http://grigoriefflab.janelia.org/unblur.
Header Operations: Perform operations on headers of hdf or bdb image file.
Create Virtual Stack: Make a virtual BDB image stack.
Organize Micrographs/Movies: Move selected micrographs/movies from source to destination directory.