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Select the action “predict” and fill all arguments in the “Required arguments” tab:
CBOX
files written by crYOLO as described in the next section.
You will find the picked particles in your specified output directory.
Alternative: Run prediction from the command line
Alternative: Run prediction from the command line
To pick all your images in the directory full_data
with the model weight file cryolo_model.h5
(e.g. or gmodel_phosnet_X_Y.h5
when using the general model) and and a confidence threshold of 0.3 run::
cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3
You will find the picked particles in the directory boxfiles
.