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Select the action “predict” and fill all arguments in the “Required arguments” tab:
CBOX
files written by crYOLO as described in the next section.
You will find the picked particles in your specified output directory.
Run prediction from the command line
Run prediction from the command line
To pick all your images in the directory full_data
with the model weights file cryolo_model.h5
(e.g. or gmodel_phosnet_X_Y.h5
when using the general model) and and a confidence threshold of 0.3 run::
cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3
You will find the picked particles in the directory boxfiles
.