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Select the action prediction and fill all arguments in the “Required arguments” tab:
CBOX
files written by crYOLO as described in the next section.
Press the the Start button to run the prediction. You will find the picked particles in your specified output directory.
Run prediction from the command line
Run prediction from the command line
To pick all your images in the directory full_data
with the model weights file 'cryolo_model.h5 (e.g. or
boxfiles''.
gmodel_phosnet_X_Y.h5
when using the general model) and and a confidence threshold of 0.3 run::
<code>
cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3
</code>
You will find the picked particles in the directory