CTF Assessment: GUI tool to assess and sort micrographs according to their CTF parameters estimated by sp_cter.

Usage in command line

sp_gui_cter.py  cter_ctf_file 

sp_gui_cter GUI tool can be run as a stand-alone program or run from the SPHIRE GUI.

sp_gui_cter.py  outdir_cter/partres.txt

Upon startup, the following windows will appear:

Control panel

Main window controlling display of the other windows, and displaying data from partres.txt

Rotational average plot, zoomed

1D profiles of the power spectra, experimental and calculated

Histogram

Plot of number of micrographs as a function of a selected parameter (see below)

Sort plot

Plot of a selected parameter (see below) for each micrograph

cter_ctf_file

File containing CTF parameters: This file is produced by sp_cter and normally called partres.txt. (default none)

The format of partres.txt is changed. The old format is also supported for now, but will be removed in near future. Please also refer sp_cter.

Toshio Moriya

Category 1:: APPLICATIONS

sparx/bin/sp_gui_cter.py

sp_cter, sp_window

Beta:: Under evaluation and testing. Please let us know if there are any bugs.

There are no known bugs so far.