No longer maintained. See pip archive https://pypi.org/project/cryolo/#history

No longer maintained. See pip archive https://pypi.org/project/cryoloBM/#history

38 real, 10 simulated, 10 particle free datasets on various grids with contamination

cryo (low-pass): DOWNLOAD

Config is the same as in version 20191221.

cryo (janni): DOWNLOAD

    {
    "model" : {
        "architecture":         "PhosaurusNet",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    700,
        "num_patches":          1,
        "filter":               ["gmodel_janni_20190703.h5",24,3,"tmp_filtered_nn"]
      }
    }

DOWNLOAD (Uploaded: 14. March 2019) Number of datasets: 32 real, 10 simulated, 10 particle free datasets on various grids with contaminations.

Config is the same as in version 20191221.

DOWNLOAD (Uploaded: 18. February 2019) Number of datasets: 30 real, 10 simulated, 10 particle free datasets on various grids with contaminations

Config is the same as in version 20191221.

DOWNLOAD (Uploaded: 21. December 2018) Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids

config.json

    {
    "model" : {
        "architecture":         "PhosaurusNet",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    700,
        "num_patches":          1,
        "filter":               [0.1,"tmp_filtered"]
      }
    }

DOWNLOAD (Uploaded: 27. November 2018) Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids

config.json

{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           1024,
        "anchors":              [205,205],
        "overlap_patches":      200,
        "max_box_per_image":    700,
        "num_patches":          2,
        "filter":               [0.1,"tmp_filtered"]
    }
}

DOWNLOAD (Uploaded: 23. August 2018) Number of real handpicked datasets included: 25 (+8 particle free datasets on various grids)

Compatible config:

config.json

{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           768,
        "anchors":              [205,205],
        "max_box_per_image":    600,
        "overlap_patches":      200,
        "num_patches":          3
    }
}

DOWNLOAD (Uploaded: 20. July 2018) Number of real handpicked datasets included: 20

Compatible config:

config.json

{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    600,
        "num_patches":          2
    }
}

DOWNLOAD (Uploaded: 04. July 2018) Number of real handpicked datasets included: 14

Compatible config:

config.json

{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           768,
        "anchors":              [160,160],
        "max_box_per_image":    600,
        "num_patches":          2
    }
}

Number of real handpicked datasets included: 10

Uploaded: 28. June 2018

DOWNLOAD

Number of real handpicked datasets included: 10

Uploaded: 28. June 2018

DOWNLOAD

config.json

{
    "model" : {
        "​architecture": ​        "​crYOLO",​ 	
        "​input_size": ​          ​1024,​
        "​anchors": ​             [160,​160],​
        "​max_box_per_image": ​   600 
    }
}

Info: Trained on cryo images, therefore negative stain will not work.