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cryolo_archive
The most recent version of this page is a draft.DiffThis version (2019/09/20 08:34) was approved by twagner.The Previously approved version (2019/09/20 08:32) is available.Diff

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crYOLO

No longer maintained. See pip archive https://pypi.org/project/cryolo/#history

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Version: 1.3.6

Uploaded: 17. May 2019 DOWNLOAD GPU VERSION DOWNLOAD CPU VERSION

Version: 1.3.5

Uploaded: 03. May 2019 DOWNLOAD GPU VERSION DOWNLOAD CPU VERSION

Version: 1.3.4

Uploaded: 23. April 2019 DOWNLOAD GPU VERSION DOWNLOAD CPU VERSION

Version: 1.3.3

Uploaded: 08. April 2019 DOWNLOAD GPU VERSIONDOWNLOAD CPU VERSION

Version: 1.3.2

Uploaded: 05. April 2019 DOWNLOAD GPU VERSION DOWNLOAD CPU VERSION

Version: 1.3.1

Uploaded: 18. March 2019 DOWNLOAD

Version: 1.3.0

Uploaded: 14. March 2019 DOWNLOAD

Version: 1.2.3

Uploaded: 12. February 2019 DOWNLOAD

Version: 1.2.2

Uploaded: 21. December 2018 DOWNLOAD

Version: 1.2.1

Uploaded: 05. December 2018 DOWNLOAD

Version: 1.2.0

Uploaded: 27. November 2018 DOWNLOAD

Version: 1.1.4

Uploaded: 18. September 2018 DOWNLOAD

Version: 1.1.3

Uploaded: 14. September 2018 DOWNLOAD

Version: 1.1.2

Uploaded: 12. September 2018 DOWNLOAD

Version: 1.1.1

Uploaded: 10. September 2018 DOWNLOAD

Version: 1.1.0

Uploaded: 23. August 2018 DOWNLOAD

Version: 1.0.4

Uploaded: 13. July 2018 DOWNLOAD

Version: 1.0.3

Uploaded: 09. July 2018 DOWNLOAD

Version: 1.0.2

Uploaded: 04. July 2018 DOWNLOAD

Version 1.0.1

Download the crYOLO version 1.0.1 here : DOWNLOAD (UPDATED at 03. July 2018)

Version 1.0.0

Download the crYOLO version 1.0.0 here : DOWNLOAD

crYOLO boxmanager

No longer maintained. See pip archive https://pypi.org/project/cryoloBM/#history

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Version: 1.2.2

Uploaded: 03. May 2019 DOWNLOAD

Version: 1.2.1

Uploaded: 05. April 2019 DOWNLOAD

Version: 1.2.0

Uploaded: 14. March 2019 DOWNLOAD

Version: 1.1.1

Uploaded: 21. December 2018 DOWNLOAD

Version: 1.1.0

Uploaded: 27. November 2018 DOWNLOAD

Version: 1.0.4

Uploaded: 18. September 2018 DOWNLOAD

Version: 1.0.3

Uploaded: 23. August 2018 DOWNLOAD

Version: 1.0.2

Uploaded: 09. July 2018 DOWNLOAD

Version: 1.0.1

Uploaded: 03. July 2018 DOWNLOAD

Version 1.0.0 Download the crYOLO boxmanager 1.0.0 here: DOWNLOAD

General PhosaursNet model

Version 20190516

38 real, 10 simulated, 10 particle free datasets on various grids with contamination

cryo (low-pass): DOWNLOAD

Config is the same as in version 20191221.

cryo (janni): DOWNLOAD

    {
    "model" : {
        "architecture":         "PhosaurusNet",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    700,
        "num_patches":          1,
        "filter":               ["gmodel_janni_20190703.h5",24,3,"tmp_filtered_nn"]
      }
    }

Version 20190314

DOWNLOAD (Uploaded: 14. March 2019) Number of datasets: 32 real, 10 simulated, 10 particle free datasets on various grids with contaminations.

Config is the same as in version 20191221.

Version 20190218

DOWNLOAD (Uploaded: 18. February 2019) Number of datasets: 30 real, 10 simulated, 10 particle free datasets on various grids with contaminations

Config is the same as in version 20191221.

Version 20191221

DOWNLOAD (Uploaded: 21. December 2018) Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids

config.json
    {
    "model" : {
        "architecture":         "PhosaurusNet",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    700,
        "num_patches":          1,
        "filter":               [0.1,"tmp_filtered"]
      }
    }

General model YOLO patched mode

Version 20181127

DOWNLOAD (Uploaded: 27. November 2018) Number of datasets: 27 (real), 10 simulated, 10 particle free datasets on various grids

config.json
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           1024,
        "anchors":              [205,205],
        "overlap_patches":      200,
        "max_box_per_image":    700,
        "num_patches":          2,
        "filter":               [0.1,"tmp_filtered"]
    }
}

Version 20180823

DOWNLOAD (Uploaded: 23. August 2018) Number of real handpicked datasets included: 25 (+8 particle free datasets on various grids)

Compatible config:

config.json
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           768,
        "anchors":              [205,205],
        "max_box_per_image":    600,
        "overlap_patches":      200,
        "num_patches":          3
    }
}

Version 20180720

DOWNLOAD (Uploaded: 20. July 2018) Number of real handpicked datasets included: 20

Compatible config:

config.json
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           1024,
        "anchors":              [205,205],
        "max_box_per_image":    600,
        "num_patches":          2
    }
}

Version 20180704

DOWNLOAD (Uploaded: 04. July 2018) Number of real handpicked datasets included: 14

Compatible config:

config.json
{
    "model" : {
        "architecture":         "YOLO",
        "input_size":           768,
        "anchors":              [160,160],
        "max_box_per_image":    600,
        "num_patches":          2
    }
}

Version 20180621

Number of real handpicked datasets included: 10

Uploaded: 28. June 2018

DOWNLOAD

General crYOLO network model

Number of real handpicked datasets included: 10

Uploaded: 28. June 2018

DOWNLOAD

config.json
{
    "model" : {
        "​architecture": ​        "​crYOLO",​ 	
        "​input_size": ​          ​1024,​
        "​anchors": ​             [160,​160],​
        "​max_box_per_image": ​   600 
    }
}

Info: Trained on cryo images, therefore negative stain will not work.

/web/sphire/www/sphire/wiki/data/pages/cryolo_archive.txt · Last modified: 2019/10/15 16:41 by twagner