Best Smear : Shows distribution of particle smear and obtain subset.
Usage in command line
sp_bestsmear.py meridien_params output_directory --max_smear=maximum_smear --stack=input_stack --verbosity=verbosity --iter=iteration_num --threads=num_threads
The “smear” is the number of reference images to which Meridien has found a correlation. The assumption behind this utility is that a lower smear corresponds to higher certainty.
The purpose of sp_bestsmear.py is to:
: show the distribution of smear number for an iteration of Meridien : select a subset of the particles with the lowest smear number
1. Show the distribution of smear number:
sp_bestsmear.py meridien_params output_directory
The main output is a distribution of the smear over the particle set.
2. Select a subset of the particles with the lowest smear:
sp_bestsmear.py meridien_params output_directory --max_smear=999 --stack=bdb:input_stack
If no input stack is provided, then only the plots, selection files, etc., will be written.
Category 1:: APPLICATIONS
Beta:: Under evaluation and testing. Please let us know if there are any bugs.