ISAC2 Stack Subset: Create a virtual subset stack consisting of particles acounted for by ISAC2 by retrieving particle numbers associated with the ISAC2 or Beautifier class averages. The command also saves a selection file containing the retrieved original image numbers and 2D alignment parameters. In addition, it stores the 2D alignment parameters to the stack header.
Usage in command line
sp_pipe.py isac_substack input_bdb_stack_path input_run_dir output_directory --isac_class_avgs_path=FILE_PATH --substack_basename=SUBSTACK_BASENAME
sp_pipe isac_substack does not support MPI.
sp_pipe.py isac_substack 'bdb:outdir_window#data' 'outdir_pipe_sac_substack' --isac_class_avgs_path='ordered_class_averages_selected.hdf'
The following options are not implemented yet.
Category 1:: APPLICATIONS
Beta:: Under evaluation and testing. Please let us know if there are any bugs.
There are no known bugs so far.