pipeline:window:start

WINDOW

crYOLO - predict: Prediction with crYOLO, a deep learning high accuracy particle picking procedure
Particle Extraction: Extract particle images from micrographs using particle coordinates files.
Particle Stack: Combine BDB image stacks of individual micrographs to a single virtual stack of all particles.

Particle Coordinates: Generate particle coordinates files using e2boxer_old particle picker.
Particle Coordinates (NEW): Generate particle coordinates files using new version of e2boxer particle picker.
Restacking: Generates the information necessary to create a new stack from an exiting one.
Particle reextraction: Rewindows particles based on rebox files.
crYOLO - training: Training of crYOLO, a deep learning high accuracy particle picking procedure

Display Data: Displays images, volumes, or 1D plots.
Organize Micrographs/Movies: Move selected micrographs/movies from source to destination directory.
crYOLO - boxmanager: Displays boxfiles on images. Allows creation of new training data for crYOLO
Batch Pipeline Execution: Run jobs that wait with the execution on each other