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--- howto:sphire_helical [2019/09/29 15:13]
mstabrin
+++ howto:sphire_helical [2019/10/01 12:42] (current)
twagner
@@ Line 30: / Line 30: @@
 {{ :howto:helical_project_filled.png?600 |}}
-<html>
+<note important>
-<div style="background-color: #cfc ; padding: 10px; border: 1px solid green;">
+**Follow the in-depth tutorial**
-<b>&#9658; Follow the steps of the normal SPA Tutorial for the steps up to the 3D refinement.
-The information about the filament width should be filled out by default for these steps.</b>
-</div>
-</html>
+Follow the steps of the normal [[downloads:sphire_1_3#tutorial|SPA Tutorial]] for the steps **up to** the 3D refinement.
+The information about the filament width should be filled out by default for these steps.
+</note>
+When you reached the step for 3D refinement:
 <html>
 <div style="background-color: #cfc ; padding: 10px; border: 1px solid green;">
@@ Line 52: / Line 52: @@
   * **Group name for chunks** - The random chunks are created based on this header entry name.
   * **Outlier group ID** - Outlier calculation is performed after every iteration. For now, they are only calculated, but not applied automatically.
   * **Helical rise [A]** - Approximate helical rise of the protein. This information is used to limit the x/y-shift range in every iteration during the refinement.
+A more detailed tutorial combined with a test dataset will follow soon.
+If you encounter any problems or in case you have questions about the procedure feel free to ask in the [[howto:mailinglist|SPHIRE mailing list]] or write me directly: markus.stabrin@mpi-dortmund.mpg.de

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