pipeline:sort3d:start

SORT3D

Import Projection Parameters: Import projection parameters from a file to image header.
3D Variability Preprocess: Prepare your symmetric particles for variability calculations.
3D Variability Estimation: Calculate the 3D variability within your reconstruction.
3D Clustering from Iteration - SORT3D_DEPTH: Find 3D clusters within your data set by checking reproducible members using a MERIDIEN iteration.
SORT3D_DEPTH Stack Subset: Create virtual subset stack consisting from particles belong to a SORT3D_DEPTH cluster.
Local Refinement from Stack: Perform local refinement from the stack with user-provided orientation parameters.
PostRefiner: Combine unfiltered halfset volumes, then enhance the power spectrum.

3D Clustering from Stack - SORT3D_DEPTH: Find 3D clusters within your data set by checking reproducible members using a stack with user-provided orientation parameters.
PostRefiner (single map): Post-refine a single map by enhancing the high frequencies (Single Map Mode)
Final 3D Reconstruction Only: Do only final 3D reconstruction using a fully finished 3D refinement iteration.

Display Data: Displays images, volumes, or 1D plots.
Volume Adjustment: Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
Masking: Mask creation tool for 2D or 3D masks
Angular Distribution: Creates a .bild file to display the particle orientation distribution in Chimera.
Batch Pipeline Execution: Run jobs that wait with the execution on each other