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pipeline:utilities:e2display [2016/11/29 19:50] msaur created |
pipeline:utilities:e2display [2019/04/02 09:15] (current) lusnig |
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- | ====== e2display ====== | + | ===== e2display ===== |
Display Data: Displays images, volumes, or 1D plots. | Display Data: Displays images, volumes, or 1D plots. | ||
+ | \\ | ||
===== Usage ===== | ===== Usage ===== | ||
- | Usage in command line: | + | Usage in command line |
e2display.py | e2display.py | ||
+ | \\ | ||
===== Typical usage ===== | ===== Typical usage ===== | ||
- | * Browser window with more flexible functionality | + | e2display exists in non-MPI version. |
+ | |||
+ | The program can be executed in several different modes: | ||
+ | |||
+ | \\ __1. Browser window with more flexible functionality:__ | ||
e2display.py | e2display.py | ||
- | * Display | + | \\ __2. Display |
- | e2display.py | + | e2display.py |
- | e2display | + | \\ __3. Display several images:__ |
+ | |||
+ | | ||
+ | \\ | ||
===== Input ===== | ===== Input ===== | ||
+ | === Main Parameters === | ||
+ | ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none) | ||
- | | + | \\ |
+ | === Advanced Parameters === | ||
+ | | ||
+ | ; %%--%%classes : Show class-averages associated with particles: Shows particles associated class averages. Requires < | ||
+ | ; %%--%%pdb : Show PDB structure: Show PDB structure. (default none) | ||
+ | ; %%--%%singleimage : Single image view: Display | ||
+ | ; %%--%%plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) | ||
+ | ; %%--%%plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) | ||
+ | ; %%--%%fullrange : Use full range of pixel values: Instead of default auto-contrast, | ||
+ | ; %%--%%newwidget : Use new 3D widget: Highly | ||
+ | ; %%--%%ppid : Set PPID: Set PPID of the process. (default | ||
+ | ; %%--%%verbose : Verbose: Accepted values 0-9. (default 0) | ||
- | ;classmx : Show particles from a class - Shows particles in one class defined in a classification matrix. The options requires < | + | \\ |
- | ; | + | ===== Output ===== |
- | ;pdb : Show PDB structure: (default none) | + | |
- | ; | + | |
- | ;plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) | + | |
- | ;plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) | + | |
- | ;fullrange : Skip auto-contrast: | + | |
- | ;newwidget : Use new 3D widget: Highly recommended. (default False) | + | |
- | ;ppid : Set PPID: Set PPID of the process. (default -2) | + | |
- | ;verbose : Verbose: Accepted values 0-9. (default 0) | + | |
+ | \\ | ||
===== Description ===== | ===== Description ===== | ||
- | e2display is a flexible program to display a wide variety of data types. The options listed above are the ones used by SPHIRE. For a description of e2display as a standalone application, | + | \\ |
+ | ==== Method ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Reference ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Developer Notes ==== | ||
+ | |||
+ | \\ | ||
==== Author / Maintainer ==== | ==== Author / Maintainer ==== | ||
EMAN2 Group | EMAN2 Group | ||
+ | \\ | ||
==== Keywords ==== | ==== Keywords ==== | ||
- | category | + | Category |
+ | \\ | ||
==== Files ==== | ==== Files ==== | ||
- | e2display.py | + | programs/e2display.py |
+ | |||
+ | \\ | ||
+ | ==== See also ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Maturity ==== | ||
+ | Stable:: Works for most people, has been tested; test cases/ | ||
+ | |||
+ | \\ | ||
+ | ==== Bugs ==== | ||
+ | There are no known bugs so far. | ||
- | ==== Known Bugs ==== | + | \\ |
- | None. | + | |