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pipeline:utilities:e2display [2016/11/30 14:23] msaur |
pipeline:utilities:e2display [2019/04/02 09:15] (current) lusnig |
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~~NOTOC~~ | ~~NOTOC~~ | ||
- | ====== e2display | + | ===== e2display ===== |
Display Data: Displays images, volumes, or 1D plots. | Display Data: Displays images, volumes, or 1D plots. | ||
\\ | \\ | ||
- | ====== Usage ====== | + | ===== Usage ===== |
Usage in command line | Usage in command line | ||
- | e2display.py | + | |
\\ | \\ | ||
- | ====== Typical usage ====== | + | ===== Typical usage ===== |
e2display exists in non-MPI version. | e2display exists in non-MPI version. | ||
- | The program can be executed in several different modes | + | The program can be executed in several different modes: |
+ | |||
+ | \\ __1. Browser window with more flexible functionality: | ||
- | | ||
e2display.py | e2display.py | ||
- | Only display | + | \\ __2. Display only one image:__ |
- | | + | |
+ | | ||
+ | |||
+ | \\ __3. Display several | ||
- | Display several images | ||
e2display.py input_image1 input_image2 ... | e2display.py input_image1 input_image2 ... | ||
\\ | \\ | ||
- | ====== Input ====== | + | ===== Input ===== |
- | === Main Options | + | === Main Parameters |
; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none) | ; input_data_list : Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none) | ||
\\ | \\ | ||
- | === Advanced | + | === Advanced |
- | ; classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires < | + | ; %%--%%classmx : Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires < |
- | ; classes : Show class-averages associated with particles: Shows particles associated class averages. Requires < | + | ; %%--%%classes : Show class-averages associated with particles: Shows particles associated class averages. Requires < |
- | ; pdb : Show PDB structure: (default none) | + | ; %%--%%pdb : Show PDB structure: |
- | ; singleimage : Single image view: Displays | + | ; %%--%%singleimage : Single image view: Display |
- | ; plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) | + | ; %%--%%plot : Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False) |
- | ; plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) | + | ; %%--%%plot3 : Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False) |
- | ; fullrange : Skip auto-contrast: Disables the auto contrast | + | ; %%--%%fullrange : Use full range of pixel values: Instead of default |
- | ; newwidget : Use new 3D widget: Highly recommended. (default False) | + | ; %%--%%newwidget : Use new 3D widget: Highly recommended. (default False) |
- | ; ppid : Set PPID: Set PPID of the process. (default -2) | + | ; %%--%%ppid : Set PPID: Set PPID of the process. (default -2) |
- | ; verbose : Verbose: Accepted values 0-9. (default 0) | + | ; %%--%%verbose : Verbose: Accepted values 0-9. (default 0) |
\\ | \\ | ||
- | ====== Output | + | ===== Output ===== |
\\ | \\ | ||
- | ====== Description ====== | + | ===== Description ===== |
+ | |||
+ | \\ | ||
+ | ==== Method ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Reference ==== | ||
+ | |||
+ | \\ | ||
+ | ==== Developer Notes ==== | ||
\\ | \\ | ||
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\\ | \\ | ||
==== Keywords ==== | ==== Keywords ==== | ||
- | category | + | Category |
\\ | \\ | ||
==== Files ==== | ==== Files ==== | ||
- | e2display.py | + | programs/e2display.py |
\\ | \\ | ||
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\\ | \\ | ||
==== Maturity ==== | ==== Maturity ==== | ||
- | No Bugs known so far. | + | Stable:: Works for most people, has been tested; test cases/ |
\\ | \\ | ||
+ | ==== Bugs ==== | ||
+ | There are no known bugs so far. | ||
+ | |||
+ | \\ | ||
+ |