https://sphire.mpg.de/wiki/ 2026-05-04T13:31:54+00:00 https://sphire.mpg.de/wiki/ https://sphire.mpg.de/wiki/lib/tpl/dokuwiki/images/favicon.ico text/html 2021-02-19T09:43:46+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&rev=1613724226&do=diff [Logo] DOCUMENTATION OUTDATED https://cryolo.readthedocs.io/en/latest/ License * Author: Thorsten Wagner * License: EULA * Last Update: 2018-06-20 If you are interested in using crYOLO in a commercial context please contact <stefan.raunser@mpi-dortmund.mpg.de> Paper You can find more technical details in our paper: Communications Biology: text/html 2018-08-22T13:19:48+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_1_0&rev=1534936788&do=diff SPHIRE 1.0 Tutorial * SPHIRE tutorial high(~40MB)|low(~10MB) quality * SPHIRE test dataset - Precalculated results * SPHIRE test dataset - Movies - Does contain all micrographs * SPHIRE test dataset - Movies (EMPIAR) - Does only contain good micrographs. * Unblur & Summovie (http://grigoriefflab.janelia.org/unblur) * Related files (Scripts, MTF, etc.) Download For this release, we officially support only the installer for CentOS6, which we tested carefully. Nevertheless, the text/html 2019-02-26T10:40:12+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_1_1&rev=1551174012&do=diff SPHIRE 1.1 What's New Main features added in this release: * Restacking program: Functionality includes the easy re-extraction and re-centering of particles based on the shift information obtained from 3D refinement, as well as straightforward exchange of CTF information. text/html 2019-09-27T10:02:10+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_1_2&rev=1569571330&do=diff SPHIRE 1.2 What's New Main features added in this release: * Will follow soon Tutorial SPHIRE 1.2 tutorial Download The installer uses Anaconda, which should install independently of the choice of Linux distribution. The Mac installer is experimental. SPHIRE does not support Windows. text/html 2019-05-29T23:50:46+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_1_2a&rev=1559166646&do=diff SPHIRE 1.2a What's New Main features added in this release: * Will follow soon Tutorial We are currently updating the tutorial to comply with the most recent version. In the meantime, links to the SPHIRE 1.0 tutorial and data sets are included below: text/html 2020-09-28T15:43:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_1_3&rev=1601300634&do=diff SPHIRE 1.3 / EMAN 2.31 We are happy to announce the release of SPHIRE 1.3. It introduces the new refinement strategy for filamentous samples, integrate our stand-alone deep learning programs and adds other helpful tools. What's new * Support for text/html 2018-06-20T13:12:08+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_beta_20161216&rev=1529493128&do=diff SPHIRE beta 2016/12/16 Download * SPHIRE installer (CentOS6) * Pydusa 1.15es (you will need this for MPI support in SPHIRE) * SPHIRE tutorial * SPHIRE test dataset - Precalculated results * SPHIRE test dataset - Movies - Does contain all micrographs * SPHIRE test dataset - Movies (EMPIAR) - Does only contain good micrographs * Related files (Scripts, MTF, etc.) Installation instructions After downloading the binaries, the package must be uncompressed in its final directory. For… text/html 2018-06-20T13:12:08+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:sphire_beta_20170602&rev=1529493128&do=diff SPHIRE beta 2017/06/02 Download For this release, we officially support only the installer for CentOS6, which we tested carefully. Nevertheless, the EMAN2 download page provides the installers for CentOS7 and Mac also. SPHIRE does not support Windows. text/html 2020-09-30T15:08:23+00:00 Anonymous (anonymous@undisclosed.example.com) https://sphire.mpg.de/wiki/doku.php?id=downloads:transphire_1&rev=1601471303&do=diff Please find all information about TranSPHIRE at <https://transphire.readthedocs.io/en/latest/>