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--- sphire_1_4 [2021/02/15 14:53]
fschoenfeld
+++ sphire_1_4 [2021/02/15 15:01]
twagner
@@ Line 24: / Line 24: @@
     * multiple improvements for better results.
-==== Documentation & Tutorial ====
+===== Documentation & Tutorial =====
   * Find the [[http://sphire.mpg.de/wiki/doku.php|SPHIRE documentation]] here.
   * Find the [[ftp://ftp.gwdg.de/pub/misc/sphire/sphire_1_3_tutorial/sphire_1_3.pdf|SPHIRE tutorial (direct link to .pdf file)]] here. (The SPHIRE tutorial is a step-by-step walkthrough of processing a data set from beginning to end, including pre-processed data milestones.)
-==== Download ====
+===== Download =====
 The SPHIRE installer uses Anaconda, which installs independently of your choice of Linux distribution.
@@ Line 50: / Line 50: @@
 **TranSPHIRE for automatated preprocessing**
-You can use TranSPHIRE to automate the cryo-EM pre-processing pipeline. When combined with AutoSPHIRE, you can also use TranSPHIRE to produce on-the-fly reconstructions during data acquisition [[[https://github.com/MPI-Dortmund/transphire|GitHub]], [[https://transphire.readthedocs.io/|documentation]]].
+You can use TranSPHIRE to automate the cryo-EM pre-processing pipeline. When combined with AutoSPHIRE, you can also use TranSPHIRE to produce on-the-fly reconstructions during data acquisition ([[https://github.com/MPI-Dortmund/transphire|GitHub]], [[https://transphire.readthedocs.io/|documentation]]).
 </note>
-==== Installation instructions ====
+===== Installation instructions =====
 Find the installation instructions here:

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