This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
pipeline:window:cryolo:picking_general [2019/10/11 17:11] twagner [2. Configuration] |
pipeline:window:cryolo:picking_general [2020/03/18 08:28] twagner [2. Configuration] |
||
---|---|---|---|
Line 26: | Line 26: | ||
* General model for negative stain images: Select filter " | * General model for negative stain images: Select filter " | ||
+ | |||
+ | |||
+ | <note tip> | ||
+ | **Anchor size is optional** | ||
+ | |||
+ | In the configuration file, the field " | ||
+ | This should not affect the picking quality. The estimated size is still contained in .cbox files. Coordinates in EMAN and STAR format are written with a box size of 0 in that case. | ||
+ | In case of the general model, you don't need to specify the anchor size anymore. | ||
+ | |||
+ | </ | ||
< | < | ||
Line 45: | Line 55: | ||
For the general **[[: | For the general **[[: | ||
< | < | ||
- | cryolo_gui.py config | + | cryolo_gui.py config |
</ | </ | ||
For the general model trained with **neural-network denoised cryo images** (with [[: | For the general model trained with **neural-network denoised cryo images** (with [[: | ||
< | < | ||
- | cryolo_gui.py config | + | cryolo_gui.py config |
</ | </ | ||
For the general model for **negative stain data** please run: | For the general model for **negative stain data** please run: | ||
< | < | ||
- | cryolo_gui.py config | + | cryolo_gui.py config |
</ | </ | ||
</ | </ |