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pipeline:window:cryolo:picking_filaments [2019/11/15 17:57]
shaikh
pipeline:window:cryolo:picking_filaments [2020/03/17 16:58]
twagner [5. Picking]
Line 69: Line 69:
 ==== 5. Picking ==== ==== 5. Picking ====
 Select the action prediction and fill all arguments in the “Required arguments” tab:  Select the action prediction and fill all arguments in the “Required arguments” tab: 
-{{ :pipeline:window:cryolo:cryolo_prediction.png?600 |}}+ 
 +{{ :pipeline:window:cryolo:cryolo_prediction_202003.png?700 |}}
  
 Now select the "Filament options" tab and check "Activate filament mode", specifiy the filament width (e.g. 100) and define the box distance (e.g. 20 for 90% overlap when using a box size if 200): Now select the "Filament options" tab and check "Activate filament mode", specifiy the filament width (e.g. 100) and define the box distance (e.g. 20 for 90% overlap when using a box size if 200):
Line 76: Line 77:
  
 The directory ''output_boxes'' will be created and all results are saved there. The format is the eman2 helix format with particle coordinates.  The directory ''output_boxes'' will be created and all results are saved there. The format is the eman2 helix format with particle coordinates. 
 +<note info>
 +**Import into Relion**
  
 You can find a detailed description [[:cryolo_filament_import_relion|how to import crYOLO filament coordinates into Relion here]]. You can find a detailed description [[:cryolo_filament_import_relion|how to import crYOLO filament coordinates into Relion here]].
 +</note>
  
  
pipeline/window/cryolo/picking_filaments.txt · Last modified: 2020/06/05 09:04 by twagner