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--- pipeline:window:cryolo:picking_filaments [2019/09/19 08:16]
twagner [2. Start crYOLO]
+++ pipeline:window:cryolo:picking_filaments [2019/09/19 15:39]
twagner [5. Picking]
@@ Line 63: / Line 63: @@
 {{ :pipeline:window:cryolo_filament.png?700 |}}
+The directory ''output_boxes'' will be created and all results are saved there. The format is the eman2 helix format with particle coordinates.
+You can find a detailed description [[:cryolo_filament_import_relion|how to import crYOLO filament coordinates into Relion here]].
@@ Line 71: / Line 75: @@
 </html>
-The directory ''output_boxes'' will be created and all results are saved there. The format is the eman2 helix format with particle coordinates.
+<html>
+<div style="background-color: LightCyan ; padding: 10px; border: 1px solid Black;">
+<b> Alternative: Run prediction in commmand line</b>
+</div>
+</html>
-You can find a detailed description [[:cryolo_filament_import_relion|how to import crYOLO filament coordinates into Relion here]].
+<hidden>
-<hidden **Alternative:** Run prediction in commmand line>
 Let's assume you want to pick a filament with a width of 100 pixels (-fw 100). The box size is 200x200 and you want a 90% overlap (-bd 20). Moreover, you wish that each filament has at least 6 boxes (-mn 6). The micrographs are in the ''full_data'' directory. Than the picking command would be:
 <code>
@@ Line 81: / Line 87: @@
 </code>
 </hidden>
+<html>
+<div style="background-color: LightCyan ; padding: 10px; border: 1px solid Black;">
+<b> </b>
+</div>
+</html>

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