pipeline:viper:sp_proj_compare
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pipeline:viper:sp_proj_compare [2019/06/18 10:15] shaikh |
pipeline:viper:sp_proj_compare [2019/12/11 18:26] shaikh |
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| sp_proj_compare.py stack input_volume outdir --mode=viper --classangles=angles_file --classselect=img_selection_file --prjmethod=interpolation_method --delta=angular_increment --matchshift=shift_range --matchrad=outer_radius --matchstep=ring_step --symmetry=optional_symmetry --partangles=refinement_params --partselect=substack_select --refineshift=shift_range --outliers=max_angle_diff --refinerad=outer_radius --refinestep=ring_step --align=2d_alignment_method --display --verbose | sp_proj_compare.py stack input_volume outdir --mode=viper --classangles=angles_file --classselect=img_selection_file --prjmethod=interpolation_method --delta=angular_increment --matchshift=shift_range --matchrad=outer_radius --matchstep=ring_step --symmetry=optional_symmetry --partangles=refinement_params --partselect=substack_select --refineshift=shift_range --outliers=max_angle_diff --refinerad=outer_radius --refinestep=ring_step --align=2d_alignment_method --display --verbose | ||
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| === Main Parameters === | === Main Parameters === | ||
| ; stack : Input images stack : Set of 2D images to be compared. (default required string) | ; stack : Input images stack : Set of 2D images to be compared. (default required string) | ||
| - | ; input_volume : Input volume : Reconstruction for which re-projections will be computed. In RVIPER, this file is of the form main003/ | + | ; input_volume : Input volume : Reconstruction for which re-projections will be computed. In RVIPER, this file is of the form main003/ |
| ; outdir : Output directory : Directory where outputs will be written. (default required string) | ; outdir : Output directory : Directory where outputs will be written. (default required string) | ||
| ; %%--%%mode : Comparison method : Choices are: viper, projmatch, and meridien. (default viper) | ; %%--%%mode : Comparison method : Choices are: viper, projmatch, and meridien. (default viper) | ||
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| ==== Files ==== | ==== Files ==== | ||
| - | sparx/ | + | sphire/ |
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| ==== Bugs ==== | ==== Bugs ==== | ||
| - | There are no known bugs so far. | + | 2019/06/18 Strange behavior when the volume/ |
| \\ | \\ | ||
pipeline/viper/sp_proj_compare.txt ยท Last modified: 2020/08/10 23:16 by shaikh
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