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pipeline:utilities:sp_separate_class [2019/12/12 09:46] shaikh |
pipeline:utilities:sp_separate_class [2019/12/12 09:52] shaikh |
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===== Input ===== | ===== Input ===== | ||
=== Main Parameters === | === Main Parameters === | ||
- | ; input_class_avgs : Set of 2D class averages, with particle-membership information in header. (default required string)[{{ : | + | ; input_class_avgs : Set of 2D class averages, with particle-membership information in header. (default required string)[{{ : |
; input_image_stack : Particle image stack. (default required string) | ; input_image_stack : Particle image stack. (default required string) | ||
; output_directory : Directory where outputs will be written. (default required string) | ; output_directory : Directory where outputs will be written. (default required string) | ||
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\\ | \\ | ||
===== Output ===== | ===== Output ===== | ||
- | ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ : | + | ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ : |
; docclass??? | ; docclass??? | ||
; params_combined.txt : (Optional) Combined particle alignment parameters | ; params_combined.txt : (Optional) Combined particle alignment parameters | ||
; stack_all.bdb : Virtual stack with all particles | ; stack_all.bdb : Virtual stack with all particles | ||
- | ; stkclass_???.bdb : Virtual stacks of particles for each class | + | ; stkorig_???.bdb : Virtual stacks of particles for each class |
- | ; stkclass_??? | + | ; stkfilt_???.bdb : (Optional) Virtual stacks of aligned and optionally filtered particles for each class |
- | ; stkalign_???.bdb : (Optional) Virtual stacks of aligned and optionally filtered particles for each class | + | |
; stkeigen.hdf : (Optional) Montage of average, variance, and eigenimages | ; stkeigen.hdf : (Optional) Montage of average, variance, and eigenimages | ||