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pipeline:utilities:sp_center_2d3d

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pipeline:utilities:sp_center_2d3d [2020/06/02 11:58]
shaikh [Typical usage]
pipeline:utilities:sp_center_2d3d [2021/02/18 16:24]
shaikh
Line 38: Line 38:
   sp_center_2d3d.py input_binary_volume output_directory --applyshift=volume_to_be_centered   sp_center_2d3d.py input_binary_volume output_directory --applyshift=volume_to_be_centered
      
-Generate the input binary volume using, for example, sp_mask.py. An adaptive mask is fine also; it will be thresholded. The mask will be centered, and those shifts will be applied to the volume to be shifted.+Generate the input binary volume using, for example, [[pipeline:viper:sp_mask|sp_mask.py]]. An adaptive mask is fine also; it will be thresholded. The mask will be centered, and those shifts will be applied to the volume to be shifted.
  
 \\ __5. Center a binarized volume by finding a box that encloses it and centering that box__: \\ __5. Center a binarized volume by finding a box that encloses it and centering that box__:
pipeline/utilities/sp_center_2d3d.txt ยท Last modified: 2021/02/18 16:24 by shaikh