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pipeline:utilities:sp_center_2d3d

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pipeline:utilities:sp_center_2d3d [2020/05/22 16:18]
shaikh
pipeline:utilities:sp_center_2d3d [2021/02/18 16:24]
shaikh
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   sp_center_2d3d.py input_binary_volume output_directory --applyshift=volume_to_be_centered   sp_center_2d3d.py input_binary_volume output_directory --applyshift=volume_to_be_centered
      
-Generate the input binary volume using, for example, sp_mask.py. An adaptive mask is fine also; it will be thresholded. The mask will be centered, and those shifts will be applied to the volume to be shifted.+Generate the input binary volume using, for example, [[pipeline:viper:sp_mask|sp_mask.py]]. An adaptive mask is fine also; it will be thresholded. The mask will be centered, and those shifts will be applied to the volume to be shifted.
  
 \\ __5. Center a binarized volume by finding a box that encloses it and centering that box__: \\ __5. Center a binarized volume by finding a box that encloses it and centering that box__:
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   sp_center_2d3d.py volume_to_be_centered output_directory --mode=blob --volradius=volume_radius   sp_center_2d3d.py volume_to_be_centered output_directory --mode=blob --volradius=volume_radius
      
-If you volume to be centered isn't round, try the radius in the smallest dimension.+If your volume to be centered isn't round, try the radius in the smallest dimension.
  
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pipeline/utilities/sp_center_2d3d.txt ยท Last modified: 2021/02/18 16:24 by shaikh