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pipeline:subtract:centershift [2021/02/01 16:08] shaikh |
pipeline:subtract:centershift [2021/10/11 17:15] (current) shaikh |
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The reconstruction will be roughly centered by alignment to a Gaussian blob of radius specified by the flag " | The reconstruction will be roughly centered by alignment to a Gaussian blob of radius specified by the flag " | ||
- | The output centered parameter file will be combine the Meridien parameters with the centering parameters. | + | The output centered parameter file will be combine the Meridien parameters with the centering parameters. |
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===== Input ===== | ===== Input ===== | ||
=== Main Parameters === | === Main Parameters === | ||
- | ; %%--%%cvol1 : First map to average and center. (default | + | ; %%--%%cvol1 : First map to average and center. (default |
; %%--%%cvol2 : Second map to average and center. (default None) | ; %%--%%cvol2 : Second map to average and center. (default None) | ||
; %%--%%shiftparams : Meridien parameters to combine with centering parameters. (default None) | ; %%--%%shiftparams : Meridien parameters to combine with centering parameters. (default None) | ||
; %%--%%diffimgs : Images from signal subtraction to reconstruct. (default None) | ; %%--%%diffimgs : Images from signal subtraction to reconstruct. (default None) | ||
; %%--%%outdir : Directory where outputs will be written. (default required string) | ; %%--%%outdir : Directory where outputs will be written. (default required string) | ||
- | ; %%--%%volradius : Radius to use for centering reconstruction. If the structure is not globular, try the shortest dimension. (default | + | ; %%--%%volradius : Radius to use for centering reconstruction. If the structure is not globular, try the shortest dimension. (default |
; %%--%%apix : Pixel size in Angstroms. (default None) | ; %%--%%apix : Pixel size in Angstroms. (default None) | ||
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; params005_centered.txt : Parameters after centering | ; params005_centered.txt : Parameters after centering | ||
+ | [{{: | ||
+ | | ||
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===== Description ===== | ===== Description ===== |