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pipeline:meridien:sp_relion_3dclassifi [2021/03/16 11:29] aali |
pipeline:meridien:sp_relion_3dclassifi [2021/03/16 11:33] (current) aali |
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; %%--%%zeros_mas : in case padding with zeros is required. (default True) | ; %%--%%zeros_mas : in case padding with zeros is required. (default True) | ||
; %%--%%limit_resol_estep : to limit the resolution | ; %%--%%limit_resol_estep : to limit the resolution | ||
- | ; %%--%%heal_pix_order : Angular sampling interval in degrees. output value can be from 8 to 0 depends on selection of values from 0.1 to 30 degrees (default 7.5 ||| 0.1 ||| 0.2 ||| 0.5 ||| 0.9 ||| 1.8 ||| 3.7 ||| 15 ||| 30) | + | ; %%--%%heal_pix_order : Angular sampling interval in degrees. output value can be from 8 to 0 depends on selection of values from 0.1 to 30 degrees (default 7.5) |
; %%--%%off_range : Offset search range (pix). Probabilities will be calculated only for translations in a circle with this radius in pixels. (default 5) | ; %%--%%off_range : Offset search range (pix). Probabilities will be calculated only for translations in a circle with this radius in pixels. (default 5) | ||
; %%--%%off_step : Offset search step (pix). Translations will be sampled with this step size in pixels. (default 1) | ; %%--%%off_step : Offset search step (pix). Translations will be sampled with this step size in pixels. (default 1) | ||
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; %%--%%skip_img_align : Skip image alignment . Whether to skip image alignment or not . (default False) | ; %%--%%skip_img_align : Skip image alignment . Whether to skip image alignment or not . (default False) | ||
; %%--%%ang_search : Perform local angular searches . Whether to perform angular search or not. (default False) | ; %%--%%ang_search : Perform local angular searches . Whether to perform angular search or not. (default False) | ||
- | ; %%--%%ang_search_range : Local angular search range . in case if is set to Yes, value is multiplied by 0.33333. (default 5) : %%--%%ang_search==True | + | ; %%--%%ang_search_range : Local angular search range . in case if is set to Yes, value is multiplied by 0.33333. (default 5) |
- | ; %%--%%ang_search_relax_sym : to relax symmetry . (default None) : %%--%%ang_search==True | + | ; %%--%%ang_search_relax_sym : to relax symmetry . (default None) |
; %%--%%para_io : Use parallel disc I/O. (default True) | ; %%--%%para_io : Use parallel disc I/O. (default True) | ||
; %%--%%skip_pad : depends on the answer for skip padding, if set to No , then pad is 2 , if set to yes then pad is 1. (default False) | ; %%--%%skip_pad : depends on the answer for skip padding, if set to No , then pad is 2 , if set to yes then pad is 1. (default False) | ||
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; %%--%%sigma_dist : Range factor of local averaging : Local averaging of orientations and translations will be performed within a range of +/- this value * the box size.(default 1.5) | ; %%--%%sigma_dist : Range factor of local averaging : Local averaging of orientations and translations will be performed within a range of +/- this value * the box size.(default 1.5) | ||
; %%--%%keep_tilt_fix : Tilt prior will not change during the optimization. (default True) | ; %%--%%keep_tilt_fix : Tilt prior will not change during the optimization. (default True) | ||
- | ; %%--%%apply_helical_sym : Whether to apply helical symmetry or not . (default False) | + | |
; %%--%%unique_asym_unit : Number of unique asymmetrical units in each segment box. (default 1) | ; %%--%%unique_asym_unit : Number of unique asymmetrical units in each segment box. (default 1) | ||
; %%--%%initial_twist : Initial twist (deg) set to positive value if it is a right-handed helix. (default 0) | ; %%--%%initial_twist : Initial twist (deg) set to positive value if it is a right-handed helix. (default 0) |