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pipeline:meridien:sp_relion_3dclassifi

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pipeline:meridien:sp_relion_3dclassifi [2021/03/16 11:29]
aali
pipeline:meridien:sp_relion_3dclassifi [2021/03/16 11:33] (current)
aali
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   ; %%--%%zeros_mas :  in case padding with zeros is required. (default True)    ; %%--%%zeros_mas :  in case padding with zeros is required. (default True) 
   ; %%--%%limit_resol_estep : to limit the resolution  E-step to (A) for fitting (default -1)   ; %%--%%limit_resol_estep : to limit the resolution  E-step to (A) for fitting (default -1)
-  ; %%--%%heal_pix_order : Angular sampling interval in degrees. output value can be from 8 to 0 depends on selection of values from 0.1 to 30 degrees (default 7.5 ||| 0.1 ||| 0.2 ||| 0.5 ||| 0.9 ||| 1.8 ||| 3.7 ||| 15 ||| 30)+  ; %%--%%heal_pix_order : Angular sampling interval in degrees. output value can be from 8 to 0 depends on selection of values from 0.1 to 30 degrees (default 7.5)
   ; %%--%%off_range : Offset search range (pix). Probabilities will be calculated only for translations in a circle with this radius in pixels. (default 5)   ; %%--%%off_range : Offset search range (pix). Probabilities will be calculated only for translations in a circle with this radius in pixels. (default 5)
   ; %%--%%off_step : Offset search step (pix). Translations will be sampled with this step size in pixels. (default 1)   ; %%--%%off_step : Offset search step (pix). Translations will be sampled with this step size in pixels. (default 1)
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   ; %%--%%skip_img_align : Skip image alignment . Whether to skip image alignment or not . (default False)   ; %%--%%skip_img_align : Skip image alignment . Whether to skip image alignment or not . (default False)
   ; %%--%%ang_search : Perform local angular searches . Whether to perform angular search or not. (default False)   ; %%--%%ang_search : Perform local angular searches . Whether to perform angular search or not. (default False)
-  ; %%--%%ang_search_range : Local angular search range . in case if is set to Yes, value is multiplied by 0.33333. (default 5) : %%--%%ang_search==True +  ; %%--%%ang_search_range : Local angular search range . in case if is set to Yes, value is multiplied by 0.33333. (default 5)  
-  ; %%--%%ang_search_relax_sym : to relax symmetry . (default None) : %%--%%ang_search==True+  ; %%--%%ang_search_relax_sym : to relax symmetry . (default None) 
   ; %%--%%para_io : Use parallel disc I/O. (default True)   ; %%--%%para_io : Use parallel disc I/O. (default True)
   ; %%--%%skip_pad : depends on the answer for skip padding, if set to No , then pad is 2 , if set to yes then pad is 1. (default False)   ; %%--%%skip_pad : depends on the answer for skip padding, if set to No , then pad is 2 , if set to yes then pad is 1. (default False)
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   ; %%--%%sigma_dist : Range factor of local averaging : Local averaging of orientations and translations will be performed within a range of +/- this value * the box size.(default 1.5)    ; %%--%%sigma_dist : Range factor of local averaging : Local averaging of orientations and translations will be performed within a range of +/- this value * the box size.(default 1.5) 
   ; %%--%%keep_tilt_fix :  Tilt prior will not change during the optimization. (default True)   ; %%--%%keep_tilt_fix :  Tilt prior will not change during the optimization. (default True)
- ; %%--%%apply_helical_sym : Whether to apply helical symmetry or not . (default False)+  ; %%--%%apply_helical_sym : Whether to apply helical symmetry or not . (default False)
   ; %%--%%unique_asym_unit : Number of unique asymmetrical units in each segment box. (default 1)   ; %%--%%unique_asym_unit : Number of unique asymmetrical units in each segment box. (default 1)
   ; %%--%%initial_twist : Initial twist (deg) set to positive value if it is a right-handed helix. (default 0)    ; %%--%%initial_twist : Initial twist (deg) set to positive value if it is a right-handed helix. (default 0) 
pipeline/meridien/sp_relion_3dclassifi.txt · Last modified: 2021/03/16 11:33 by aali