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--- pipeline:meridien:sp_polishing [2021/03/16 10:30]
aali
+++ pipeline:meridien:sp_polishing [2021/03/16 10:44]
aali [Usage]
@@ Line 3: / Line 3: @@
 ===== sp_polishing =====
-Bayesian : Apply Relion Bayesian Polishing on SPHIRE generated stack.
+Bayesian Polishing : Apply Relion Bayesian Polishing on SPHIRE generated stack.
 ===== Usage =====
@@ Line 10: / Line 10: @@
 <code>
-sp_polishing.py post_refine_folder motioncorr_starfile output_folder training_params –first_frame
+  sp_polishing.py post_refine_folder motioncorr_starfile output_folder training_params --first_frame --last_frame --bfac_minfreq --bfac_maxfreq --min_no_particles --submission_template --submission_command --relion_mpirun_executable --relion_polishing_executable --mpi_procs --no_of_threads --mrc_reloc_folder
-–last_frame –bfac_minfreq –bfac_maxfreq –min_no_particles –submission_template –submission_command
-–relion_mpirun_executable –relion_polishing_executable –mpi_procs –no_of_threads –mrc_reloc_folder
 </code>