This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
pipeline:meridien:sp_higher_ord_abber [2021/03/22 16:40] aali |
pipeline:meridien:sp_higher_ord_abber [2021/03/22 16:49] (current) aali |
||
---|---|---|---|
Line 33: | Line 33: | ||
=== Main Parameters === | === Main Parameters === | ||
- | ; post_refine_folder : : Input folder is the directory where the results of the post refiner are present and python routine automatically locates all the required files used for ctf refinement. (default required string) | + | ; |
; output_folder : : Output folder is the directory where all the results of the ctf refinement are saved. (default required string) | ; output_folder : : Output folder is the directory where all the results of the ctf refinement are saved. (default required string) | ||
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
- | ; < | + | ; < |
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
=== Advanced Parameters === | === Advanced Parameters === | ||
- | ; ; < | + | |
===== Output ===== | ===== Output ===== | ||
- | ; ; particles_ctf_refine.star | + | |
- | ; ; bdb: | + | ; bdb: |
- | ; ; BDB2STAR | + | ; BDB2STAR : Using sphire2relion tool , the bdb stack is converted to star file so that it can be used in relion. The star file is saved in BDB2STAR folder. |
- | ; ; PostProcess | + | ; PostProcess : Since the input to the tool is Post refiner directory, the tool can automatically create the necessary file in PostProcess folder which is necessary to provide for ctf refinement. |
===== ===== | ===== ===== |