User Tools

Site Tools


janni

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Last revision Both sides next revision
janni [2021/05/20 15:33]
twagner
janni [2022/07/25 11:18]
twagner [Changelog]
Line 19: Line 19:
 === JANNI === === JANNI ===
  
-Version: 0.2.1+Version: 0.3
  
-Uploaded: 20May 2021+Uploaded: 22July 2022
  
 [[https://pypi.org/project/janni/#files|DOWNLOAD]] [[https://pypi.org/project/janni/#files|DOWNLOAD]]
Line 32: Line 32:
  
 [[https://github.com/MPI-Dortmund/sphire-janni/raw/master/janni_general_models/gmodel_janni_20190703.h5|DOWNLOAD]] [[https://github.com/MPI-Dortmund/sphire-janni/raw/master/janni_general_models/gmodel_janni_20190703.h5|DOWNLOAD]]
 +
  
 ==== Known Issues ==== ==== Known Issues ====
Line 42: Line 43:
  
 1. In case you have a old JANNI environment installed, you might want to remove the old one with: 1. In case you have a old JANNI environment installed, you might want to remove the old one with:
-<code> 
  
 +<code>
 conda env remove --name janni conda env remove --name janni
  
Line 51: Line 52:
  
 <code> <code>
-conda create -n janni -c anaconda python=3.cudnn=7.1.libtiff wxPython=4.0.4+conda create -n janni -c conda-forge -c anaconda pyqt=5 python=3.7 cudatoolkit=10.0.130 cudnn=7.6.5 numpy==1.18.5 libtiff wxPython=4.1.1 adwaita-icon-theme
  
 </code> </code>
Line 62: Line 63:
 </code> </code>
  
-Now can install JANNI either for GPUs **or**  for CPUs+Now can install JANNI either for GPUs **or** for CPUs:
- +
-4a. **For GPU:**  Install JANNI form PyPi for a GPU machine:+
  
 +4a. **For GPU:** Install JANNI form PyPi for a GPU machine:
 <code> <code>
 pip install janni[gpu] pip install janni[gpu]
Line 71: Line 71:
 </code> </code>
  
-4b. **For CPU:**  Install JANNI form PyPi for a CPU machine: +4b. **For CPU:** Install JANNI form PyPi for a CPU machine:
 <code> <code>
 pip install janni[cpu] pip install janni[cpu]
  
 </code> </code>
 +
  
 ==== Getting started ==== ==== Getting started ====
  
-[[:janni_tutorial|Here you can find a tutorial how to denoise your micrograghs with JANNI]]+[[:janni_tutorial|Here you can find a tutorial how to denoise your micrographs with JANNI]] 
  
 ==== How to cite ==== ==== How to cite ====
Line 89: Line 90:
  
 ==== Changelog ==== ==== Changelog ====
 +
 +**JANNI 0.3.1:**
 +
 +   * Fix dependency issue with protobuf (Thanks to Tapu Shaikh)
 +
 +**JANNI 0.3:**
 +
 +  * Update dependencies and fix setup.
 +
 +**JANNI 0.2.2:**
 +
 +  * Fix an issue that JANNI can't denoise a single image (it only worked for folders) (Thanks to Sony Malhotra)
  
 **JANNI 0.2.1:** **JANNI 0.2.1:**
  
-  * Because of an libary update, JANNI was not working anymore (No supported model).+  * Because of an libary update, JANNI was not working anymore (No supported model) (Thanks to 
 + 
 +Sony Malhotra) .
  
 **JANNI 0.2** **JANNI 0.2**
janni.txt · Last modified: 2022/07/25 11:19 by twagner