User Tools

Site Tools


auto_2d_class_selection

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
auto_2d_class_selection [2020/08/27 12:18]
twagner [Pretrained model (2D classes)]
auto_2d_class_selection [2020/08/27 12:56]
fschoenfeld
Line 9: Line 9:
  
 Our binary classification  tool (**Cinderella**) is based on a deep learning network to classify class averages, micrographs or subtomograms into good and bad categories. Our binary classification  tool (**Cinderella**) is based on a deep learning network to classify class averages, micrographs or subtomograms into good and bad categories.
-For class averages, it supports .hdf/.mrcsfor micrographs .mrc format and for subtomograms it expect that they are saved in a .hdf file+Cinderella supports ''.hdf/.mrcs'' ** files for class averages**, ''.mrc'' **files for micrographs**, and ''.hdf'' **files for subtomograms**
-Cinderella was written to automate cryo-em data processing.  It's open source and easy to use. +**Cinderella** was written to automate cryo-em data processing.  It's open source and easy to use. 
-We provide a pretrained general model for classifying class averages.([[auto2d_tutorial|see tutorial]]). But you can easily train it with your own set of classes/micrographs/subtomograms.+We provide a pretrained general model for classifying class averages.([[auto2d_tutorial|see tutorial]]). But you can easily train it with your own set of classesmicrographs, and/or subtomograms.
  
 <note> <note>
-  * **License**: MIT +  * **License**: [[https://github.com/MPI-Dortmund/sphire_classes_autoselect/blob/master/LICENSE|MIT]] 
-  * **GitHub repository**: https://github.com/MPI-Dortmund/sphire_classes_autoselect+  * **Repository**: [[https://github.com/MPI-Dortmund/sphire_classes_autoselect|GitHub]]
 </note> </note>
  
Line 50: Line 50:
   * Fix numerical instability that occur when you have classes filled with a constant value (Thanks to Grigory Sharov).   * Fix numerical instability that occur when you have classes filled with a constant value (Thanks to Grigory Sharov).
   * Fix a problem with classes that contain NaN values. NaN values are now replaced with 0. (Thanks to Grigory Sharov).   * Fix a problem with classes that contain NaN values. NaN values are now replaced with 0. (Thanks to Grigory Sharov).
 +  * Fix an issue when filenames contain more than one point.
  
 === Version 0.6 === === Version 0.6 ===
auto_2d_class_selection.txt · Last modified: 2020/08/27 15:11 by twagner