e2display
Display Data: Displays images, volumes, or 1D plots.
Usage
Usage in command line
e2display.py input_data_list --classmx=CLASSMX --classes=CLASSES --pdb=PDB --singleimage --plot --plot3 --fullrange --newwidget --ppid=PPID --verbose=n
Typical usage
e2display exists in non-MPI version.
The program can be executed in several different modes:
1. Browser window with more flexible functionality:
e2display.py
2. Display only one image:
e2display.py input_image
3. Display several images:
e2display.py input_image1 input_image2 ...
Main Parameters
- input_data_list
- Input files: List of input images, volumes, plots. Wild cards (e.g *) can be used to select a list of files. Not recommended when the list is too large. (default none)
Advanced Parameters
- --classmx
- Show particles from a class: Shows particles in one class defined in a classification matrix. The options requires <classmx>,<#>. (default none)
- --classes
- Show class-averages associated with particles: Shows particles associated class averages. Requires <rawptcl>,<classmx>. (default none)
- --pdb
- Show PDB structure: Show PDB structure. (default none)
- --singleimage
- Single image view: Display a stack in a single image view. (default False)
- --plot
- Plot 2D: Data file(s) should be plotted rather than displayed in 2D. (default False)
- --plot3
- Plot 3D: Data file(s) should be plotted rather than displayed in 3D. (default False)
- --fullrange
- Use full range of pixel values: Instead of default auto-contrast, use full range of pixel values for the display of particles stacks and 2D images. (default False)
- --newwidget
- Use new 3D widget: Highly recommended. (default False)
- --ppid
- Set PPID: Set PPID of the process. (default -2)
- --verbose
- Verbose: Accepted values 0-9. (default 0)
Output
Description
Method
Reference
Developer Notes
Author / Maintainer
Keywords
Category 1:: APPLICATIONS
Files
See also
Maturity
Stable:: Works for most people, has been tested; test cases/examples available.
Bugs
There are no known bugs so far.