===== VIPER =====

=== Commands ===
  ; [[sxrviper|Initial 3D Model - RVIPER]] : Reproducible ab initio 3D structure determination.
  ; [[sp_proj_compare|Compare re-projections]] : Compare re-projections to class averages 
  ; [[pipeline:utilities:sxpipe_moon_eliminator|Volume Adjustment]] : Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
  ; [[sp_mask|Masking]] : Mask creation tool for 2D or 3D masks
    
\\
=== Alternatives ==
  ; [[sxviper|Initial 3D Model - VIPER]] : ab initio 3D structure determination.  
  ; [[pipeline:utilities:sxpdb2em|PDB File Conversion]] : Converts an PDB atomic model into a simulated density map.  
  
\\  
=== Utilities ===
  ; [[pipeline:utilities:e2display|Display Data]] : Displays images, volumes, or 1D plots.
  ; [[pipeline:utilities:sxpipe_angular_distribution|Angular Distribution]] : Creates a .bild file to display the particle orientation distribution in Chimera.    
  ; [[pipeline:utilities:sp_batch|Batch Pipeline Execution]] : Run jobs that wait with the execution on each other