===== Utilities =====
  ; [[pipeline:utilities:sp_batch|Batch Pipeline Execution]] : Run jobs that wait with the execution on each other
  ; [[e2display|Display Data]] : Displays images, volumes, or 1D plots.
  ; [[sxpdb2em|PDB File Conversion]] : Converts an PDB atomic model into a simulated density map.  
  ; [[sxrelion2sphire|RELION to SPHIRE Conversion]] : Convert parameters from RELION to SPHIRE formats.
  ; [[sp_sphire2relion|SPHIRE to RELION  Conversion]] : Convert parameters from SPHIRE to RELION formats.
  ; [[pipeline:utilities:sp_separate_class|Separate Into Classes]] : Separates stacks of particle images into stacks for each class.
  ; [[pipeline:viper:sp_proj_compare|Compare re-projections]] : Compare re-projections to class averages 
  ; [[pipeline:utilities:sxpipe_moon_eliminator|Volume Adjustment]] : Resamples, clips, and removes disconnected regions from a 3D map. It optionally creates a mask from the resulting volume.
  ; [[pipeline:viper:sp_mask|Masking]] : Mask creation tool for 2D or 3D masks
  ; [[sxprocess|Change Size of Image or Volume]] : Change size of image or map
  ; [[https://blake.bcm.edu/emanwiki/EMAN2/Programs/e2proc3d|Window Volume]] : Window (pad or clip) volume to the specificy dimension
  ; [[sxpipe_angular_distribution|Angular Distribution]] : Creates a .bild file to display the particle orientation distribution in Chimera.
  ; [[pipeline:window:sp_cryolo_boxmanager|crYOLO - boxmanager]] : Displays boxfiles on images. Allows creation of new training data for crYOLO
  ; [[pipeline:utilities:sxprocess|Balance Angular Distribution ]] : Balance angular distribution of projection directions by removing excess particles
  ; [[sxprocess|PostRefiner (Single Volumes)]] : Enhancing the power spectrum of any single volumes (Single Volumes Mode).
  ; [[pipeline:movie:sxsummovie|Micrograph Movie Summation]] : Create an average micrograph using Summovie [[http://grigoriefflab.janelia.org/unblur]].
  ; [[sxheader|Header Operations]] : Perform operations on headers of hdf or bdb image file.
  ; [[e2bdb|Create Virtual Stack]] : Make a virtual BDB image stack.
  ; [[sxpipe_organize_micrographs|Organize Micrographs/Movies]] : Move selected micrographs/movies from source to destination directory.
  ; [[pipeline:utilities:sp_ctf_refine|CTF refine (Meridien)]] : Refine the defocus per particle
  ; [[pipeline:utilities:sp_ctf_refine_stack|CTF refine (Stack)]] : Refine, manual, the defocus per particle