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pipeline:utilities:sp_separate_class [2020/01/31 11:36] shaikh [Input] |
pipeline:utilities:sp_separate_class [2020/01/31 11:37] shaikh [Output] |
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; %%--%%shrink : Downsampling factor, e.g., 6 -> 1/6 original size. (default None) | ; %%--%%shrink : Downsampling factor, e.g., 6 -> 1/6 original size. (default None) | ||
; %%--%%align_isac_dir : If applying alignments, directory for ISAC output (default None) | ; %%--%%align_isac_dir : If applying alignments, directory for ISAC output (default None) | ||
- | ; %%--%%nvec | + | ; %%--%%nvec : Number of eigenimages to compute. (default None) |
- | ; %%--%%ctf | + | ; %%--%%ctf : Applies CTF correction. (default False) |
- | ; %%--%%verbose | + | ; %%--%%verbose : Writes additional messages to the terminal during execution. (default False) |
| | ||
\\ | \\ | ||
=== Advanced Parameters === | === Advanced Parameters === | ||
; %%--%%format : Format of optional output aligned-imaged stacks. (default .mrcs) | ; %%--%%format : Format of optional output aligned-imaged stacks. (default .mrcs) | ||
- | ; %%--%%debug | + | ; %%--%%debug : Writes additional diagnostics for debugging. (default False) |
\\ | \\ | ||
===== Output ===== | ===== Output ===== | ||
; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ : | ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ : | ||
- | ; docclass??? | + | ; Docs/docclass??? |
- | ; params_combined.txt : (Optional) Combined particle alignment parameters | + | ; EMAN2DB/ |
- | ; stack_all.bdb : Virtual | + | ; EMAN2DB/ |
- | ; stkorig_???.bdb : Virtual stacks of particles for each class | + | ; Docs/ |
- | ; stkfilt_???.bdb : (Optional) | + | ; stkavgvar.hdf : (Optional) Montage |
- | ; stkeigen.hdf : (Optional) Montage of average, variance, and eigenimages | + | ; stkeigen.hdf : (Optional) Montage of class averages, variances, and eigenimages |