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pipeline:utilities:sp_separate_class [2019/12/12 09:54] shaikh |
pipeline:utilities:sp_separate_class [2020/01/31 11:31] shaikh [Usage] |
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Usage in command line: | Usage in command line: | ||
+ | sp_separate_class.py input_class_avgs input_image_stack output_directory --isac_dir=isac_dir --filt=filter_radius --pxsz=pixel_size --shrink=shrink_factor --nvec=number_of_eigenimages --verbose | ||
sp_separate_class.py input_class_avgs input_image_stack output_directory --filtrad=filter_radius --apix=pixel_size --shrink=shrink_factor --align_isac_dir=isac_directory --format=stack_format | sp_separate_class.py input_class_avgs input_image_stack output_directory --filtrad=filter_radius --apix=pixel_size --shrink=shrink_factor --align_isac_dir=isac_directory --format=stack_format | ||
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: write particle-membership lists for each class | : write particle-membership lists for each class | ||
- | : write separate stacks for each class, | + | : write separate stacks for each class, |
+ | : optionally | ||
: optionally compute eigenimages (basis images) for each class | : optionally compute eigenimages (basis images) for each class | ||