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pipeline:utilities:sp_separate_class [2019/12/12 09:53] shaikh |
pipeline:utilities:sp_separate_class [2019/12/12 09:54] shaikh |
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\\ __5. Compute eigenimages (basis images) for each class__: | \\ __5. Compute eigenimages (basis images) for each class__: | ||
- | sp_separate_class.py input_class_avgs input_image_stack output_directory --align_isac_dir=isac_directory --nvec=number_of_factors | + | sp_separate_class.py input_class_avgs input_image_stack output_directory --align_isac_dir=isac_directory --nvec=number_of_eigenimages |
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The additional output, stkeigen.hdf, | The additional output, stkeigen.hdf, | ||
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\\ | \\ | ||
===== Output ===== | ===== Output ===== | ||
- | ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ : | + | ; classmap.txt : Class-to-particle lookup table, one file for all classes[{{ : |
; docclass??? | ; docclass??? | ||
; params_combined.txt : (Optional) Combined particle alignment parameters | ; params_combined.txt : (Optional) Combined particle alignment parameters |