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auto_2d_class_selection [2020/08/27 12:56] fschoenfeld |
auto_2d_class_selection [2020/08/27 15:11] (current) twagner [Changelog] |
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- | Our binary classification | + | Our binary classification |
Cinderella supports '' | Cinderella supports '' | ||
- | **Cinderella** was written to automate cryo-em data processing. | + | //Cinderella// was written to automate cryo-em data processing. |
- | We provide a pretrained general model for classifying class averages.([[auto2d_tutorial|see tutorial]]). But you can easily train it with your own set of classes, micrographs, | + | We provide a pretrained general model for classifying class averages ([[auto2d_tutorial|see tutorial]]). But you can easily train it with your own set of classes, micrographs, |
< | < | ||
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====== 2D class selection model ====== | ====== 2D class selection model ====== | ||
- | Our model was trained on a set of 2D classes from ISAC and Relion. During the creation of the training | + | Our model was trained on a set of 2D classes from both [[https:// |
{{ :: | {{ :: | ||
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====Pretrained model (2D classes)==== | ====Pretrained model (2D classes)==== | ||
- | Uploaded: 27. August 2020, Dataset: 4773 good classes and 5390 bad classes | + | Uploaded: 27. August 2020, Dataset: 4773 good classes and 5390 bad classes. |
[[ftp:// | [[ftp:// | ||
====Archive==== | ====Archive==== | ||
- | Old versions of cinderella and the pretrained model can be found in the [[cinderella_archive|archive]] | + | Old versions of cinderella and the pretrained model can be found in the [[cinderella_archive|archive]]. |
====Changelog==== | ====Changelog==== | ||
=== Version 0.7 === | === Version 0.7 === | ||
- | * Now uses a circular masks by default. This allows to use full rotation during data augmentation. Can be deactivated by setting the field "mask_radius" | + | * Now uses a **circular masks by default**. This allows to use full rotation during data augmentation. Can be deactivated by setting the field '' |
- | * The general models now includes 300 new good Relion classes and 2000 new bad Relion classes (Thanks to Grigory | + | * The general models now includes |
- | * Fix numerical instability that occur when you have classes filled with a constant value (Thanks to Grigory Sharov). | + | * Fixed numerical instability that occurs |
- | * Fix a problem with classes that contain NaN values. NaN values are now replaced with 0. (Thanks to Grigory Sharov). | + | * Fixed a problem with classes that contain NaN values. NaN values are now replaced with 0. (//Thanks to Grigory Sharov//). |
- | * Fix an issue when filenames contain more than one point. | + | * Fixed an issue when filenames contain more than one point. |
=== Version 0.6 === | === Version 0.6 === |