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pipeline:window:start

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pipeline:window:start [2018/08/22 12:43]
fmerino 		pipeline:window:start [2019/04/02 11:40]
lusnig
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 === Commands === === Commands ===
-  ; [[e2boxer_old|Particle Coordinates]] : Generate particle coordinates files using e2boxer_old particle picker.+  ; [[sp_cryolo_predict|crYOLO - predict]] : Prediction with crYOLO, a deep learning high accuracy particle picking procedure
   ; [[sxwindow|Particle Extraction]] : Extract particle images from micrographs using particle coordinates files.   ; [[sxwindow|Particle Extraction]] : Extract particle images from micrographs using particle coordinates files.
   ; [[pipeline:utilities:e2bdb|Particle Stack]] : Combine BDB image stacks of individual micrographs to a single virtual stack of all particles.    ; [[pipeline:utilities:e2bdb|Particle Stack]] : Combine BDB image stacks of individual micrographs to a single virtual stack of all particles. 
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 === Alternatives === === Alternatives ===
 +  ; [[e2boxer_old|Particle Coordinates]] : Generate particle coordinates files using e2boxer_old particle picker.
   ; [[e2boxer|Particle Coordinates (NEW)]] : Generate particle coordinates files using new version of e2boxer particle picker.   ; [[e2boxer|Particle Coordinates (NEW)]] : Generate particle coordinates files using new version of e2boxer particle picker.
   ; [[pipeline:utilities:sxpipe_restacking|Restacking]] : Generates the information necessary to create a new stack from an exiting one.   ; [[pipeline:utilities:sxpipe_restacking|Restacking]] : Generates the information necessary to create a new stack from an exiting one.
   ; [[sxrewindow|Particle reextraction]] : Rewindows particles based on rebox files.   ; [[sxrewindow|Particle reextraction]] : Rewindows particles based on rebox files.
 +  ; [[sp_cryolo_train|crYOLO - training]] : Training of crYOLO, a deep learning high accuracy particle picking procedure
          
 \\ \\
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   ; [[pipeline:utilities:e2display|Display Data]] : Displays images, volumes, or 1D plots.   ; [[pipeline:utilities:e2display|Display Data]] : Displays images, volumes, or 1D plots.
   ; [[pipeline:utilities:sxpipe_organize_micrographs|Organize Micrographs/Movies]] : Move selected micrographs/movies from source to destination directory.   ; [[pipeline:utilities:sxpipe_organize_micrographs|Organize Micrographs/Movies]] : Move selected micrographs/movies from source to destination directory.
 +  ; [[sp_cryolo_boxmanager|crYOLO - boxmanager]] : Displays boxfiles on images. Allows creation of new training data for crYOLO
 +  ; [[pipeline:utilities:sp_batch|Batch Pipeline Execution]] : Run jobs that wait with the execution on each other
  
pipeline/window/start.txt ยท Last modified: 2019/04/02 11:40 by lusnig

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