pipeline:window:e2boxer

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pipeline:window:e2boxer [2018/08/22 10:45]
fmerino
pipeline:window:e2boxer [2019/04/02 09:21] (current)
lusnig
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 === Advanced Parameters === === Advanced Parameters ===
-  ; %%--%%allmicrographs : Include all micrographs in a directory: Add all images from micrographs folder. (default False) 
   ; %%--%%unboxedonly : Include only unboxed micrographs:​ Only include image files without existing box locations. (default False)   ; %%--%%unboxedonly : Include only unboxed micrographs:​ Only include image files without existing box locations. (default False)
   ; %%--%%write_ptcls : Save selected particle: Extract selected particles from micrographs and write to disk. (default False)   ; %%--%%write_ptcls : Save selected particle: Extract selected particles from micrographs and write to disk. (default False)
-  ; %%--%%suffix : Micrograph suffix: Suffix of the micrographs used for particle picking (i.e. suffix=goodali will use micrographs end with _goodali.hdf). It is only useful when --allmicrographs option is True. (default none)+  ​; %%--%%allmicrographs : Include all micrographs in a directory: Add all images from micrographs folder. (default False) 
 +  ​; %%--%%suffix : Micrograph suffix: Suffix of the micrographs used for particle picking (i.e. suffix=goodali will use micrographs end with _goodali.hdf). It is only useful when --allmicrographs option is True. (default none): %%--%%allmicrographs==True
   ; %%--%%voltage : Microscope voltage [kV]: The acceleration voltage of microscope used for imaging. (default -1)   ; %%--%%voltage : Microscope voltage [kV]: The acceleration voltage of microscope used for imaging. (default -1)
   ; %%--%%cs : Microscope spherical aberration (Cs) [mm]: The spherical aberration (Cs) of microscope used for imaging. (default -1)   ; %%--%%cs : Microscope spherical aberration (Cs) [mm]: The spherical aberration (Cs) of microscope used for imaging. (default -1)
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 ==== Bugs ==== ==== Bugs ====
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  • pipeline/window/e2boxer.txt
  • Last modified: 2019/04/02 09:21
  • by lusnig