pipeline:window:cryolo:visualize

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pipeline:window:cryolo:visualize [2020/03/12 17:04]
twagner
pipeline:window:cryolo:visualize [2020/03/18 08:35] (current)
twagner
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-To visualize your results you can use the box manager+To visualize your results you can use the boxmanager
-<​code>​ + 
-cryolo_boxmanager.py +{{ :​pipeline:​window:​cryolo:​cryolo_visualize_202003.png?700 |}} 
-</​code>​ + 
-Now press //File -> Open image folder// and the select the ''​full_data''​ directory. ​The first image should pop up. Then you import the box files with //File -> Import box files// and select ​in the ''​boxfiles''​ folder ​the ''​EMAN''​ directory ​(or ''​EMAN_HELIX_SEGMENTED''​ in case of filaments). ​+As image_dir you select the ''​full_data''​ directory. ​As box_dir ​you select the ''​CBOX''​ folder (or ''​EMAN_HELIX_SEGMENTED''​ in case of filaments). 
  
 <note warning> <note warning>
 **The following does not yet work for filaments**. **The following does not yet work for filaments**.
 </​note>​ </​note>​
-CrYOLO writes cbox files in a separate ''​CBOX''​ folder. Those files contains ​besides the particles ​more information like the confidence and the estimated size of each particle. When importing .cbox files into the box manager, it enables more filtering options in the GUI. You can plot size- and confidence distributions. Moreover, you can change the confidence threshold, minimum and maximum size and see the results in a live preview. If you are done with the filtering, you can then write the new box selection into new box files. The video below shows an example.+CBOX files contain ​besides the particle coordinates ​more information like the confidence and the estimated size of each particle. When importing .cbox files into the box manager, it enables more filtering options in the GUI. You can plot size- and confidence distributions. Moreover, you can change the confidence threshold, minimum and maximum size and see the results in a live preview. If you are done with the filtering, you can then write the new box selection into new box files. The video below shows an example.
  
-[{{ :​pipeline:​window:​cryolo:​cryolo_size_adjustment_5.gif?​400 |This example shows how to filter particle boxes using the crYOLO boxmanager. It is an animated GIF. Click on it to see it playing.}}]+[{{ :​pipeline:​window:​cryolo:​cryolo_size_adjustment_5.gif?​700 |This example shows how to filter particle boxes using the crYOLO boxmanager. It is an animated GIF. Click on it to see it playing.}}]
  
  
  
  
  • pipeline/window/cryolo/visualize.txt
  • Last modified: 2020/03/18 08:35
  • by twagner