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--- pipeline:window:cryolo:visualize [2019/09/14 10:18]
twagner created
+++ pipeline:window:cryolo:visualize [2020/03/12 16:58]
twagner
@@ Line 3: / Line 3: @@
 cryolo_boxmanager.py
 </code>
-Now press //File -> Open image// folder and the select the ''full_data'' directory. The first image should pop up. Then you import the box files with //File -> Import box files// and select in the ''boxfiles'' folder the ''EMAN'' directory.
+Now press //File -> Open image folder// and the select the ''full_data'' directory. The first image should pop up. Then you import the box files with //File -> Import box files// and select in the ''boxfiles'' folder the ''EMAN'' directory (or ''EMAN_HELIX_SEGMENTED'' in case of filaments).
-Since version 1.3.0 crYOLO writes cbox files in a separate ''CBOX'' folder. You can import them into the box manager, change the threshold easily using the live preview and write the new box selection into new box files.
-[{{ :pipeline:window:ezgif-1-3b966b0324d1.gif?400 |This example shows how to filter particle boxes using the cryolo boxmanager. It is an animated gif. Click on it to see it playing.}}]
 <note warning>
-Right now, **this filtering does not yet work for filaments**.
+**The following does not yet work for filaments**.
 </note>
+CrYOLO writes cbox files in a separate ''CBOX'' folder. You can import these into the box manager which enables a slider in the GUI that allows you to change the confidence threshold and see the results in a live preview. You can then write the new box selection into a new box file.
+[{{ :pipeline:window:cryolo:cryolo_size_adjustment_5.gif?400 |This example shows how to filter particle boxes using the crYOLO boxmanager. It is an animated GIF. Click on it to see it playing.}}]

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