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pipeline:window:cryolo:picking_general [2020/03/18 08:27] twagner [2. Configuration] |
pipeline:window:cryolo:picking_general [2020/05/25 10:14] twagner |
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+ | <note important> | ||
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+ | **DOCUMENTATION OUTDATED** | ||
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+ | The documentation has moved to https:// | ||
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+ | </ | ||
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===== Picking particles - Without training using a general model ===== | ===== Picking particles - Without training using a general model ===== | ||
Here you can find how to apply the general models we trained for you. If you would like to train your own general model, please see our extra wiki page: [[: | Here you can find how to apply the general models we trained for you. If you would like to train your own general model, please see our extra wiki page: [[: | ||
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**Anchor size is optional** | **Anchor size is optional** | ||
- | In the configuration file, the field " | + | In the configuration file, the field " |
This should not affect the picking quality. The estimated size is still contained in .cbox files. Coordinates in EMAN and STAR format are written with a box size of 0 in that case. | This should not affect the picking quality. The estimated size is still contained in .cbox files. Coordinates in EMAN and STAR format are written with a box size of 0 in that case. | ||
- | In case of the general model, you don't need to specify the anchor size anymore. | ||
</ | </ | ||
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For the general **[[: | For the general **[[: | ||
< | < | ||
- | cryolo_gui.py config | + | cryolo_gui.py config |
</ | </ | ||
For the general model trained with **neural-network denoised cryo images** (with [[: | For the general model trained with **neural-network denoised cryo images** (with [[: | ||
< | < | ||
- | cryolo_gui.py config | + | cryolo_gui.py config |
</ | </ | ||
For the general model for **negative stain data** please run: | For the general model for **negative stain data** please run: | ||
< | < | ||
- | cryolo_gui.py config | + | cryolo_gui.py config |
</ | </ | ||
</ | </ |