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--- pipeline:window:cryolo:picking_general [2019/09/20 10:07]
twagner [2. Configuration]
+++ pipeline:window:cryolo:picking_general [2020/03/18 08:27]
twagner [2. Configuration]
@@ Line 17: / Line 17: @@
 {{ :pipeline:window:cryolo_filter_options.png?300|}}
-[[:downloads:cryolo_1#general_phosaurusnet_models|There are three general models available]]. It is important that you choose the same filtering options in //"Denoising options"// tab as we did during training the general models. In the following are the filtering setting that we used for the respective general model:
+[[:downloads:cryolo_1#general_phosaurusnet_models|There are three general models available]]. It is important that you choose the same filtering options in //"Denoising options"// tab as we did during training the general models. In the following are the filtering settings that we used for the respective general models:
   * General model trained for low-pass filtered images : Select //filter// "LOWPASS" and //low_pass_cutoff// of 0.1
@@ Line 26: / Line 26: @@
   * General model for negative stain images: Select filter "NONE"
+<note tip>
+**Anchor size is optional**
+In the configuration file, the field "anchors" is optional during prediction. That means, you don't to define a box size during prediction, as crYOLO does a size estimation internally. This of of advantage for automated pipelines. You can simply delete the entry.
+This should not affect the picking quality. The estimated size is still contained in .cbox files. Coordinates in EMAN and STAR format are written with a box size of 0 in that case.
+ In case of the general model, you don't need to specify the anchor size anymore.
+</note>
 <html>
@@ Line 40: / Line 50: @@
 </html>
-<hidden>
+<hidden initialState="visible">
 In the following I assume that you target box size is 220. Please adapt if necessary.

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