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pipeline:window:cryolo:picking_filaments [2019/09/19 08:16] twagner [3. Configuration] |
pipeline:window:cryolo:picking_filaments [2019/09/19 15:44] twagner [3. Configuration] |
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==== 2. Start crYOLO ==== | ==== 2. Start crYOLO ==== | ||
+ | If you followed the installation instructions, | ||
+ | |||
+ | < | ||
+ | source activate cryolo | ||
+ | </ | ||
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{{page> | {{page> | ||
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{{page> | {{page> | ||
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==== 4. Training ==== | ==== 4. Training ==== | ||
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{{ : | {{ : | ||
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+ | The directory '' | ||
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+ | You can find a detailed description [[: | ||
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- | The directory '' | + | < |
- | + | <div style=" | |
- | You can find a detailed description [[:cryolo_filament_import_relion|how to import crYOLO filament coordinates into Relion here]]. | + | <b> Alternative: Run prediction in commmand line</ |
+ | </ | ||
+ | </ | ||
- | < | + | < |
Let's assume you want to pick a filament with a width of 100 pixels (-fw 100). The box size is 200x200 and you want a 90% overlap (-bd 20). Moreover, you wish that each filament has at least 6 boxes (-mn 6). The micrographs are in the '' | Let's assume you want to pick a filament with a width of 100 pixels (-fw 100). The box size is 200x200 and you want a 90% overlap (-bd 20). Moreover, you wish that each filament has at least 6 boxes (-mn 6). The micrographs are in the '' | ||
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</ | </ | ||
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+ | </ | ||