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pipeline:window:cryolo:picking [2019/09/14 10:14] twagner |
pipeline:window:cryolo:picking [2019/09/19 15:47] twagner |
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- | You can now use the model weights file (//e.g. '' | + | Select |
- | < | + | {{ : |
- | cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/ | + | |
- | </ | + | |
- | You will find the picked particles in the directory '' | + | <note tip> |
+ | **Adjusting confidence threshold** | ||
- | If you want to pick less conservatively | + | In crYOLO, all particles have an assigned confidence value. By default, all particles with a confidence value below 0.3 are discarded. |
+ | However, it is much easier to select the best threshold after picking | ||
+ | </note> | ||
+ | |||
+ | You will find the picked particles in your specified output directory. | ||
+ | |||
+ | < | ||
+ | <div style=" | ||
+ | < | ||
+ | </ | ||
+ | </ | ||
+ | |||
+ | |||
+ | < | ||
+ | <div style=" | ||
+ | < | ||
+ | </div> | ||
+ | </ | ||
+ | < | ||
+ | To pick all your images in the directory '' | ||
< | < | ||
- | cryolo_predict.py -c config.json -w model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.2 | + | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 |
</ | </ | ||
- | However, it is much easier to select | + | |
+ | You will find the picked particles in the directory | ||
+ | </ | ||
+ | < | ||
+ | <div style=" | ||
+ | <b> </ | ||
+ | </ | ||
+ | </ |