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pipeline:window:cryolo:picking

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pipeline:window:cryolo:picking [2020/03/13 08:50]
twagner
pipeline:window:cryolo:picking [2020/03/13 09:02]
twagner
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   * **DISTR:** Contains the plots of confidence- and size-distribution. Moroever, it contains a machine readable text-file the summary statistics about these distributions and their raw data in separate text-files.   * **DISTR:** Contains the plots of confidence- and size-distribution. Moroever, it contains a machine readable text-file the summary statistics about these distributions and their raw data in separate text-files.
  
-You will find the picked particles in your specified output directory. 
  
 <html> <html>
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 </div> </div>
 </html> </html>
-<hidden>+ 
 +<hidden initialState="visible">
 To pick all your images in the directory ''full_data'' with the  model weight file ''cryolo_model.h5'' (//e.g. or ''gmodel_phosnet_X_Y.h5'' when using the general model//) and and a confidence threshold of 0.3 run::  To pick all your images in the directory ''full_data'' with the  model weight file ''cryolo_model.h5'' (//e.g. or ''gmodel_phosnet_X_Y.h5'' when using the general model//) and and a confidence threshold of 0.3 run:: 
 <code> <code>
 cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3
 </code> </code>
- 
 You will find the picked particles in the directory ''boxfiles''. You will find the picked particles in the directory ''boxfiles''.
-</hidden initialState="visible">+</hidden> 
 <html> <html>
 <div style="background-color: LightCyan ; padding: 10px; border: 1px solid Black;">  <div style="background-color: LightCyan ; padding: 10px; border: 1px solid Black;"> 
pipeline/window/cryolo/picking.txt · Last modified: 2020/05/17 11:04 by twagner