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pipeline:window:cryolo:picking [2019/10/11 17:11] twagner |
pipeline:window:cryolo:picking [2020/03/13 09:01] twagner |
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- | You will find the picked particles | + | After picking is done, you can find four folders |
+ | * **CBOX:** Contains a coordinate file in .cbox format each input micrograph. It contains all detected particles, even those with a confidence lower the selected confidence threshold. Additionally it contains the confidence and the estimated diameter for each particle. Importing those files into the boxmanager allows you advanced filtering e.g. according size or confidence. | ||
+ | * **EMAN:** Contains a coordinate file in .box format each input micrograph. Only particles with the an confidence higher then the selected (default: 0.3) are contained in those files. | ||
+ | * **STAR:** Contains a coordinate file in .star format each input micrograph. Only particles with the an confidence higher then the selected (default: 0.3) are contained in those files. | ||
+ | * **DISTR:** Contains the plots of confidence- and size-distribution. Moroever, it contains a machine readable text-file the summary statistics about these distributions and their raw data in separate text-files. | ||
< | < | ||
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To pick all your images in the directory '' | To pick all your images in the directory '' | ||
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cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 | cryolo_predict.py -c config.json -w cryolo_model.h5 -i full_data/ -g 0 -o boxfiles/ -t 0.3 | ||
</ | </ | ||
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You will find the picked particles in the directory '' | You will find the picked particles in the directory '' | ||
</hidden initialState=" | </hidden initialState=" | ||
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< | < | ||
<div style=" | <div style=" |